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| Ultimate™ ORFCard for Clone ID IOH29191 | |
|---|---|
| Gene Information | |
| Clone ID: | IOH29191 |
| Organism: | Homo sapiens |
| Matching Nucleotide Accession: | ENST00000437847 |
| Category: | 23126 |
| Comment: | HS.489873 |
| Related Accession(s): | AL589764|Alignment || AB007930|Alignment || AB037911|Alignment || AJ242979|Alignment || AK000199|Alignment || AW167360|Alignment || BC042018|Alignment || BC057773|Alignment || BX537561|Alignment || BX537838|Alignment || BX649163|Alignment |
| Gene Name: | pogo transposable element with ZNF domain |
| Gene Definition: | pogo transposable element with ZNF domain |
| Gene Symbol: | POGZ |
| Summary: | The protein encoded by this gene appears to be a zinc finger protein containing a transposase domain at the C-terminus. This protein was found to interact with the transcription factor SP1 in a yeast two-hybrid system. At least three alternatively spliced transcript variants encoding distinct isoforms have been observed. |
| Expression: | Sage Tag Expression || Virtual Northern || Digital Expression Profile |
| Transcript Variant 1: | This variant (1) encodes the longest isoform (1). |
| Transcript Variant 2: | This variant (2) lacks an in-frame coding segment compared to variant 1. The resulting isoform (2) lacks an internal region, as compared to isoform 1. |
| Transcript Variant 3: | This variant (3) lacks multiple exons in the 3' region and differs in the 3' end compared to variant 1. The resulting isoform (3) has a distinct and much shorter C-terminus, as compared to isoform 1. |
| mRNA Record: | NM_015100|Alignment || NM_145796|Alignment || NM_207171|Alignment |
| GO Category: biological process | development (GO:0007275) |
| GO Category: cellular component | nucleus (GO:0005634) |
| GO Category: molecular function | nucleic acid binding (GO:0003676) zinc ion binding (GO:0008270) |
| References: | GRIF: 23126 | PUBMED: POGZ |
| ORF Information | |
| ORF length (bp): | 1092 |
| Sequence: | Nucleotide || Peptide || Translation || Quality Scores || Quality Scores with Sequence |
| Clone Information | |
| Collection Name: | Ultimate ORF Clones |
| Collection Type: | ORF Gateway™ Entry |
| Vector Name: | pENTR(tm)221 |
| Vector Antibiotic: | Kanamycin |
| Host Name: | E.coli |
| Protein | |
| Protein Accession: | CAI16807|Alignment || CAI16808|Alignment || CAI16809|Alignment || BAA32306|Alignment || BAB87117|Alignment || CAB45136|Alignment || AAH57773|Alignment || CAD97850|Alignment || Q7Z3K3|Alignment |
| Protein Record: | NP_055915|Alignment || NP_665739|Alignment || NP_997054|Alignment |
| Physical Properties: | (aa) || 0.0 (MW) || 0.0 (pI) |
| Protease Digestion: | Trypsin | Lys-C | Arg-C | Asp-N | V8-bicarb | V8-phosph | Chymotrypsin | CNBr |
| Predicted Secondary Structure: | View Secondary Structure |
| Protein Model Search: | Swiss-Model BLAST |
| Product: | pogo transposable element with ZNF domain isoform 3 |
| SNP Information | |
| SNP: | All rs in gene region | rs in coding region only | rs with heterozygosity only |
| SNP Map to: | Protein |
| Genomic Link | |
| LocusLink ID: | 23126 |
| Unigene ID: | Hs.489873 |
| Genome Alignment: | Map to Human Genome using BLAT || Map to Ensembl Genome Browser |
|
Disclaimer: Invitrogen™ Corporation provides an evolving clone collection where each gene represented is identified as containing a complete open reading frame, based on a dynamic source of bioinformatic information contained within GenBank. GenBank is a genetic sequence database, which contains an annotated collection of all publicly available DNA sequences. Ultimate™ ORF Clones are typically derived from cDNA clones believed to contain a complete open reading frame, according to the most current GenBank update. Please note, subsequent GenBank updates may show some of these cDNA clones to contain a partial sequence, a non-coding sequence or other artifacts. Quarterly, Invitrogen™ Corporation will update the Ultimate™ ORF Clone Collection, by adding, deleting, or modifying the bioinformatic information to more accurately reflect the most current scientific information associated with each of the clones represented in the collection. It is highly recommended that the purchaser carefully evaluate the ORF clone sequence prior to purchase. It is the purchaser’s responsibility to check whether the sequence associated with any particular clone meets his/her scientific requirement prior to purchase. Invitrogen makes no warranties, express or implied, that the manufacture, use, importation, or sale of the gene contained within any Ultimate™ ORF clone will not infringe any third party intellectual property right. | |