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| Ultimate™ ORFCard for Clone ID IOH22301 | |
|---|---|
| Gene Information | |
| Clone ID: | IOH22301 |
| Organism: | Homo sapiens |
| Matching Nucleotide Accession: | BC030773.1|Alignment |
| Category: | 27020 |
| Comment: | HS.187866 |
| Related Accession(s): | AB209812|Alignment || AF035287|Alignment || AF109126|Alignment || AF109127|Alignment || AK129908|Alignment || AL117411|Alignment || BC030773|Alignment || BC067828|Alignment |
| Gene Name: | stromal cell derived factor receptor 1 |
| Gene Definition: | Homo sapiens, gi|21315076 Similar to stromal cell derived factor receptor 1 |
| Gene Symbol: | SDFR1 |
| Summary: | Stromal cell derived receptor 1 is a type I transmembrane protein belonging to the Ig superfamily. The protein is believed to be involved in cell-cell interactions or cell-substrate interactions. The alpha and beta transcripts show differential localization within the brain. |
| Expression: | Sage Tag Expression || Virtual Northern || Digital Expression Profile |
| Transcript Variant : | This splice variant (alpha) does not include a third Ig domain in the extra-cellular region. |
| mRNA Record: | NM_012428|Alignment || NM_017455|Alignment |
| GO Category: cellular component | membrane (GO:0016020) |
| GO Category: molecular function | mannose binding (GO:0005537) receptor activity (GO:0004872) |
| References: | GRIF: 27020 | PUBMED: SDFR1 |
| ORF Information | |
| ORF length (bp): | 666 |
| Sequence: | Nucleotide || Peptide || Translation || Quality Scores || Quality Scores with Sequence |
| Clone Information | |
| Collection Name: | Ultimate ORF Clones |
| Collection Type: | ORF Gateway™ Entry |
| Vector Name: | pENTR(tm)221 |
| Vector Antibiotic: | Kanamycin |
| Host Name: | E.coli |
| Protein | |
| Protein Accession: | BAD93049|Alignment || AAB88179|Alignment || AAD43217|Alignment || AAD43218|Alignment || CAB55909|Alignment || AAH67828|Alignment |
| Protein Record: | NP_036560|Alignment || NP_059429|Alignment |
| Physical Properties: | (aa) || 0.0 (MW) || 0.0 (pI) |
| Protease Digestion: | Trypsin | Lys-C | Arg-C | Asp-N | V8-bicarb | V8-phosph | Chymotrypsin | CNBr |
| Predicted Secondary Structure: | View Secondary Structure |
| Protein Model Search: | Swiss-Model BLAST |
| Product: | stromal cell derived factor receptor 1 isoform b |
| Human Proto Array: | ProtoArray Human Protein Microarray nc v1.0 |
| SNP Information | |
| SNP: | All rs in gene region | rs in coding region only | rs with heterozygosity only |
| SNP Map to: | Protein |
| Genomic Link | |
| LocusLink ID: | 27020 |
| Unigene ID: | Hs.187866 |
| Genome Alignment: | Map to Human Genome using BLAT || Map to Ensembl Genome Browser |
|
Disclaimer: Invitrogen™ Corporation provides an evolving clone collection where each gene represented is identified as containing a complete open reading frame, based on a dynamic source of bioinformatic information contained within GenBank. GenBank is a genetic sequence database, which contains an annotated collection of all publicly available DNA sequences. Ultimate™ ORF Clones are typically derived from cDNA clones believed to contain a complete open reading frame, according to the most current GenBank update. Please note, subsequent GenBank updates may show some of these cDNA clones to contain a partial sequence, a non-coding sequence or other artifacts. Quarterly, Invitrogen™ Corporation will update the Ultimate™ ORF Clone Collection, by adding, deleting, or modifying the bioinformatic information to more accurately reflect the most current scientific information associated with each of the clones represented in the collection. It is highly recommended that the purchaser carefully evaluate the ORF clone sequence prior to purchase. It is the purchaser’s responsibility to check whether the sequence associated with any particular clone meets his/her scientific requirement prior to purchase. Invitrogen makes no warranties, express or implied, that the manufacture, use, importation, or sale of the gene contained within any Ultimate™ ORF clone will not infringe any third party intellectual property right. | |