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| Ultimate™ ORFCard for Clone ID IOH10217 | |
|---|---|
| Gene Information | |
| Clone ID: | IOH10217 |
| Organism: | Homo sapiens |
| Matching Nucleotide Accession: | BC011250.1|Alignment |
| Category: | 8776 |
| Comment: | HS.347187 |
| Related Accession(s): | AF002223|Alignment || AF057354|Alignment || AJ224979|Alignment || AK001816|Alignment || AK023451|Alignment || AK055513|Alignment || BC011250|Alignment || BC032947|Alignment || U58032|Alignment |
| Gene Name: | myotubularin related protein 1 |
| Gene Definition: | Homo sapiens, myotubularin related protein 1, mRNA (cDNA clone IMAGE:3453013), complete cds. |
| Gene Symbol: | MTMR1 |
| Summary: | This gene encodes a member of the myotubularin related family of proteins. Members of this family contain the consensus sequence for the active site of protein tyrosine phosphatases. Alternative splicing results in two transcript variants encoding different isoforms. Additional variants have been described but their biological validity has not been determined. |
| Expression: | Sage Tag Expression || Virtual Northern || Digital Expression Profile |
| Transcript Variant 1: | This variant (1) encodes the longer isoform (1) of this protein. |
| Transcript Variant 2: | This variant (2), also called MTMR1a, includes an additional exon in the coding region, resulting in a frameshift and an early termination codon compared to variant 1. Isoform 2 is shorter and has a distinct C-terminus compared to isoform 1. |
| mRNA Record: | NM_003828|Alignment || NM_176789|Alignment |
| GO Category: biological process | phospholipid dephosphorylation (GO:0046839) protein amino acid dephosphorylation (GO:0006470) |
| GO Category: cellular component | cellular component unknown (GO:0008372) |
| GO Category: molecular function | hydrolase activity (GO:0016787) inositol or phosphatidylinositol phosphatase activity (GO:0004437) protein serine/threonine phosphatase activity (GO:0004722) protein tyrosine phosphatase activity (GO:0004725) |
| References: | GRIF: 8776 | PUBMED: MTMR1 |
| ORF Information | |
| ORF length (bp): | 117 |
| Sequence: | Nucleotide || Peptide || Translation || Quality Scores || Quality Scores with Sequence |
| Clone Information | |
| Collection Name: | Ultimate ORF Clones |
| Collection Type: | ORF Gateway™ Entry |
| Vector Name: | pENTR(tm)221 |
| Vector Antibiotic: | Kanamycin |
| Host Name: | E.coli |
| Protein | |
| Protein Accession: | AAD40368|Alignment || CAA12271|Alignment || BAB70939|Alignment || AAH11250|Alignment || AAH32947|Alignment || AAC79117|Alignment || Q13613|Alignment |
| Protein Record: | NP_003819|Alignment || NP_789746|Alignment |
| Physical Properties: | (aa) || 0.0 (MW) || 0.0 (pI) |
| Protease Digestion: | Trypsin | Lys-C | Arg-C | Asp-N | V8-bicarb | V8-phosph | Chymotrypsin | CNBr |
| Predicted Secondary Structure: | View Secondary Structure |
| Protein Model Search: | Swiss-Model BLAST |
| OMIM: | 300171 |
| Product: | myotubularin-related protein 1 isoform 2 |
| KEGG Pathway: | Thiamine metabolism |
| KEGG Pathway: | Riboflavin metabolism |
| KEGG Pathway: | Vitamin B6 metabolism |
| KEGG Pathway: | Aminosugars metabolism |
| KEGG Pathway: | Fructose and mannose metabolism |
| KEGG Pathway: | Nicotinate and nicotinamide metabolism |
| SNP Information | |
| SNP: | All rs in gene region | rs in coding region only | rs with heterozygosity only |
| SNP Map to: | Protein |
| Genomic Link | |
| LocusLink ID: | 8776 |
| Unigene ID: | Hs.347187 |
| Genome Alignment: | Map to Human Genome using BLAT || Map to Ensembl Genome Browser |
|
Disclaimer: Invitrogen™ Corporation provides an evolving clone collection where each gene represented is identified as containing a complete open reading frame, based on a dynamic source of bioinformatic information contained within GenBank. GenBank is a genetic sequence database, which contains an annotated collection of all publicly available DNA sequences. Ultimate™ ORF Clones are typically derived from cDNA clones believed to contain a complete open reading frame, according to the most current GenBank update. Please note, subsequent GenBank updates may show some of these cDNA clones to contain a partial sequence, a non-coding sequence or other artifacts. Quarterly, Invitrogen™ Corporation will update the Ultimate™ ORF Clone Collection, by adding, deleting, or modifying the bioinformatic information to more accurately reflect the most current scientific information associated with each of the clones represented in the collection. It is highly recommended that the purchaser carefully evaluate the ORF clone sequence prior to purchase. It is the purchaser’s responsibility to check whether the sequence associated with any particular clone meets his/her scientific requirement prior to purchase. Invitrogen makes no warranties, express or implied, that the manufacture, use, importation, or sale of the gene contained within any Ultimate™ ORF clone will not infringe any third party intellectual property right. | |